Morris, G.P., Harder, A.M., Healey, A.L., McLaughlin, C.M., Rice, B.R., Cruet-Burgos, C., Jenkins, J.W., Rifkin, J.L., Shu, S., Spiekerman, J.J., VanGessel, C.J., Audebert, A., Barry, K., Baxter, I., Beurier, G., Boston, L.B., Boyles, R.E., Brady, S.M., Bunting, V., Chaparro, J.M., Courtney, C., Dembele, J.S.B., Deshpande, S., Diatta, C., Eck, N., Eveland, A.L., Faye, J.M., Fonceka, D., Gano, B., de Gracia Coquerel, M., Goodstein, D., Grimwood, J., Hudson, M.E., Kholova, J., Johnson, K., Johnson, K.K., Kawa, D., Kouressy, M., Kresovich, S., Lemaux, P., Luquet, D., Maina, F., Michael, T.P., Mindaye, T.T., Mullet, J., Ozersky, P., Plott, C., Prenni, J.E., Pressoir, G., Rami, J.-F., Rife, T.W., Saxton, J., Sine, B., Sreedasyam, A., Talag, J., Teme, N., Tuinstra, M., Vadez, V., Vogel, J.P., Walstead, R., Wang, J., Webber, J., Williams, M., Zaman, S., Mockler, T.C., Lasky, J.R., Schmutz, J., Shakoor, N., & Lovell, J.T. “Developing future resilience from signatures of adaptation across the sorghum pangenome.” Nature (provisionally accepted Dec 2025; revisions submitted) DOI: https://doi.org/10.1101/2025.08.01.667986

Odenkirk, M.T.; Michel C.; Doenges, K.A.; Leaptrot, K.L.; Sherrod, S.D.; May, J.C.; Read, M.L.; Chaparro, J.M.; Montgomery, N.; Brinkley, S.; Vaniya, A.; Mitchell, S.M. ; Yu, B.; Elhaderi, J.K.; Henson, L.; Broeckling C.D.; Feihn, O.; Reisdorph, R.; Reisdorph, N.; McLean J. A.; Chein, C.; Shafizadeh, T.; de la Parra, J.; Ahmed, S.; Watkins, S.; Prenni, J.E. A standardized nontargeted metabolomics method for cross-laboratory comparison of food profiles, Food Chemistry, Volume 493, Part 3, 2025,145934, ISSN 0308-8146, https://doi.org/10.1016/j.foodchem.2025.145934.

Keohane, E. ; Prenni, J.E.; Johnson, S.A.; Van Buiten, C. Comparing apples to apples: Evaluating foodomics in precision nutrition research featuring the influence of polyphenols on the gut microbiome, Nutrition Research,Volume 142, 2025, Pages 76-90, ISSN 0271-5317, https://doi.org/10.1016/j.nutres.2025.09.003.

 Zhai, C.; Zhu, C.; Hernandez-Sintharakao, M.; Rice, E.; Bechtold, E.; Prenni, J.E.; Woerner, D.; Nair, M. Validating the Ability of Rapid Evaporative Ionization Mass Spectrometry to Differentiate Sheep Meat Flavor Based on Consumer Preference. Meat and Muscle Biology. 2025 10; 9(1) :1-15. doi: https://doi.org/10.22175/mmb.20207

Jones, R. R.; Chaparro, J. M.; Maloley, K.; Evans, J. C.; Boyko, S.; Gruszczynski, M.; Prenni, J.E. Rapid, semi-quantitative arsenic speciation across diverse food matrices via reverse phase HPLC-ICP-MS. Journal of Food Composition and Analysis 2025, 147, 108000. DOI: https://doi.org/10.1016/j.jfca.2025.108000.

Brinkley, S.; Gallo-Franco, J. J.; Vázquez-Manjarrez, N.; Chaura, J.; Quartey, N. K. A.; Toulabi, S. B. ; Odenkirk, M. T. ; Jermendi, E.; Laporte, M.-A.; Lutterodt, H. E.; Annan, R.A.; Barboza, M.; Amare, E.; Srichamnong, W.; Jaramillo-Botero, A.; Kennedy, G.; Bertoldo, J.; Prenni, J.E.; Rajasekharan, M.; de la Parra, J.; Ahmed, S. The state of food composition databases: data attributes and FAIR data harmonization in the era of digital innovation. Frontiers in Nutrition 2025, 12, Original Research. DOI: https://doi.org/10.3389/fnut.2025.1552367

Johnson, L. G.; Zhai, C.; Prusa, K. J.; Nair, M. N.; Prenni, J. E.; Chaparro, J. M.; Huff-Lonergan, E.; Lonergan, S. M. Proteomic and metabolomic profiling of aged pork loin chops reveals molecular phenotypes linked to pork tenderness. Journal of animal science 2024, 102. DOI:10.1093/jas/skae355

Sandoval, B.; Chaparro, J. M. ; Williams, S.; Alexander, J.; Prenni, J. E. Characterization of Smoke Taint in Hops: Insights from Laboratory Simulation and Chemical Profiling. Journal of the American Society of Brewing Chemists, 2024 1-6. DOI: 10.1080/03610470.2024.2419203.

Seitz, V. A.; McGivern, B. B.; Borton, M. A.; Chaparro, J. M.; Schipanski, M. E.; Prenni, J. E.; Wrighton, K. C. Cover crop root exudates impact soil microbiome functional trajectories in agricultural soils. Microbiome 2024, 12 (1), 183. DOI: 10.1186/s40168-024-01886-x.

Jones, R. R.; Odenkirk, M. T.; Bertoldo, J.; Prenni, J. E. Contextualizing toxic elements in the diet: a case for integration of toxic element data into food databases. Frontiers in Nutrition 2024, 11, Perspective. DOI: 10.3389/fnut.2024.1473282.

Johnson, L. G.; Zhai, C.; Brown, K.; Prenni, J. E.; N. Nair, M.; Huff-Lonergan, E.; Lonergan, S. M. Secondary Lipid Oxidation Products as Modulators of Calpain-2 Functionality In Vitro. Journal of Agricultural and Food Chemistry 2024, 72 (21), 12229-12239. DOI: 10.1021/acs.jafc.4c00335

Pieper, J. R.; Anthony, B. M.; Chaparro, J. M.; Prenni, J. E.; Minas, I. S. Rootstock vigor dictates the canopy light environment that regulates metabolite profile and internal fruit quality development in peach. Plant Physiology and Biochemistry 2024, 208, 108449.  https://doi.org/10.1016/j.plaphy.2024.108449.

Sandoval, B.; Bowen, J. K.; Richards, T.; Chaparro, J. M.; Lee, M.; Uchanski, M.; Cranshaw, W.; Prenni, J. E. Impact of Defoliation Stress on Phytocannabinoid Content in Industrial Hemp. Industrial Crops and Products 2024, 211, 118226.  https://doi.org/10.1016/j.indcrop.2024.118226.

Chai, Y. N.; Qi, Y.; Goren, E.; Chiniquy, D.; Sheflin, A. M.; Tringe, S. G.; Prenni, J. E.; Liu, P.; Schachtman, D. P. Root-associated bacterial communities and root metabolite composition are linked to nitrogen use efficiency in sorghum. mSystems 2024, 9 (1), e01190-01123.  https://doi.org/10.1128/msystems.01190-23.

Ventura, M.; Holland, M. E.; Smith, M. B.; Chaparro, J. M.; Prenni, J.; Patz, J. A.; Paskewitz, S.; Weir, T. L.; Stull, V. J. “Suitability of maize crop residue fermented by Pleurotus ostreatus as feed for edible crickets: growth performance, micronutrient content, and iron bioavailability.” Frontiers in Nutrition, 2023 https://doi.org/10.3389/fnut.2023.1157811.

Hernandez-Sintharakao, M., Sarchet, C., Prenni, J., Woerner, D., Zhai, C & Nair, M. “Prediction of Tenderness, Juiciness, and Flavor Profile of 2 Beef Muscles with Different Aging Times Using Rapid Evaporative Ionization Mass Spectrometry (REIMS)” Meat and Muscle Biology, 2023 https://doi.org/10.22175/mmb.16120.

Larson, V. J.; Rico, J. L.; Wolfe, L. M.; Sharvelle, S.; Prenni, J.; De Long, S. K. Composting post-anaerobic digestion for emerging contaminant biodegradation: Impacts of operating conditions. Journal of Environmental Quality 2023, 52 (6), 1152-1165. https://doi.org/10.1002/jeq2.20515.

Hayes, C. B.; Carter, O.; MacWilliams, J. R.; Cranshaw, W.; Chaparro, J. M.; Prenni, J. E.; Nachappa, P. “Biology and management of hemp russet mite (Acari: Eriophyidae).” Journal of Economic Entomology, 2023 https://doi.org/10.1093/jee/toad137.

Seitz, V.A.; Chaparro, J.M.; Schipanski, M.E.; Wrighton, K.C.; Prenni, J.E. “Cover Crop Cultivar, Species, and Functional Diversity is Reflected in Variable Root Exudation Composition” Journal of Agricultural and Food Chemistry, 2023 https://doi.org/10.1021/acs.jafc.3c02912.

Nasiatka, K.J.; Bettenhausen, H.M.; Chaparro, J.M.; Heuberger, A.L.; Prenni, J.E. “Rapid Characterization of Hops (Humulus lupulus) Using DART-MS and Chemometrics” Journal of the American Society of Brewing Chemists, 2023 https://doi.org/10.1080/03610470.2023.2213238.

Zhai, C.; Lonergan, S.M.; Huff-Lonergan, E.J.; Johnson, L.G.; Brown, K.; Prenni, J.E.; Nair, M.N. “Lipid Peroxidation Products Influence Calpain-1 Functionality In Vitro by Covalent Binding” Journal of Agricultural and Food Chemistry, 2023 https://doi.org/10.1021/acs.jafc.3c01225.

Chaparro, J.M.; Jones, R.R.; Mitchell, S.B.; Broeckling, C.D.; Heuberger, A.L.; Shafizadeh, T.; Watkins, S.; Prenni, J.E. “Multielement Profiling of Diverse Food Samples. ACS Food Science & Technology” 2023 https://doi.org/10.1021/acsfoodscitech.2c00396.

Fromuth, K.; Chaparro, J.M.; Sedin, D.; Van Buiten, C.; Prenni, J.E. “Characterizing the Impact of Package Type on Beer Stability” ACS Food Science & Technology, 2023 https://doi.org/10.1021/acsfoodscitech.2c00351.

Ahmed, S.; Chien, C.; de la Parra, J.; German, J.; Jarvis, A.; Lal, V.; Lartey, A.; McDade, M.; Morgan, K.; Prenni, J.; Rajasekharan, M.; Shafizadeh, T.; Vázquez-Manjarrez, N.; Watkins, S. “What is in a Tomato? Mapping the Building Blocks of Food” Front. Young Minds, 2023 https://doi.org/10.3389/frym.2023.1038318.

Anthony, B.M.; Chaparro, J.M.; Prenni, J.E.; Minas, I.S. “Carbon sufficiency boosts phenylpropanoid biosynthesis early in peach fruit development priming superior fruit quality” Plant Physiology and Biochemistry, 2023 https://doi.org/10.1016/j.plaphy.2023.02.038.

Zhai, C.; Schilling, B.; Prenni, J.E.; Brooks, J.C.; Legako, J.F.; Miller, R.K.; Hernandez-Sintharakao, M.J.; Gifford, C.L.; Delmore, R.; Nair, M.N. “Evaluating the ability of rapid evaporative ionization mass spectrometry to differentiate beef palatability based on consumer preference” Journal of Food Science and Technology, 2022 https://doi.org/10.1007/s13197-022-05562-6.

Ahmed, S.; de la Parra, J.; Elouafi, I.; German, B.; Jarvis, A.; Lal, V.; Lartey, A.; Longvah, T.; Malpica, C.; Vázquez-Manjarrez, N.; Prenni, J.E; Aguilar-Salinas, C. A.; Srichamnong, W.; Rajasekharan, M.; Shafizadeh, T.; Siegel, J. B.; Steiner, R.; Tohme, J.; Watkins, S. “Foodomics: A Data-Driven Approach to Revolutionize Nutrition and Sustainable Diets” Frontiers in Nutrition, 2022 https://doi.org/10.3389/fnut.2022.874312.

Seitz, V. A.; McGivern, B. B.; Daly, R. A.; Chaparro, J. M.; Borton, M. A.; Sheflin, A. M.; Kresovich, S.; Shields, L.; Schipanski, M. E.; Wrighton, K. C.; Prenni, J.E. “Variation in Root Exudate Composition Influences Soil Microbiome Membership and Function” Applied Environmental Microbiology, 2022 https://doi.org/10.1128/aem.00226-22.

Berry, J. C.; Qi, M.; Sonawane, B. V.; Sheflin, A.; Cousins, A.; Prenni, J.E.; Schachtman, D. P.; Liu, P.; Bart, R. S. “Increased signal-to-noise ratios within experimental field trials by regressing spatially distributed soil properties as principal components” eLife, 2022 https://doi.org/10.7554/eLife.70056.

Anthony, B.M.; Sterle, D.G.; Chaparro, J.M.; Prenni, J.E.; Minas, I.S. “Controlling for maturity reveals the direct impact of canopy position on internal fruit quality in peach” International Society for Horticultural Science (ISHS), Leuven, Belgium: pp 799-806, 2022 https://doi.org/10.17660/ActaHortic.2022.1346.102.

Yao, L.; Davidson, E.A.; Shaikh, M.W.; Forsyth, C.B.; Prenni, J.E.; Broeckling, C.D. “Quantitative analysis of short-chain fatty acids in human plasma and serum by GC-MS” Analytical and Bioanalytical Chemistry, 2022 https://doi.org/10.1007/s00216-021-03785-8.

Bowen, J.K.; Chaparro, J.M.; McCorkle, A.M.; Palumbo, E.; Prenni, J.E. “The impact of extraction protocol on the chemical profile of cannabis extracts from a single cultivar” Scientific reports 11(1), 2021 https://doi.org/10.1038/s41598-021-01378-0.

Goren, E.; Wang, C.; He, Z.; Sheflin, A.; Chiniquy, D.; Prenni, J.; Tringe, S.; Schachtman, D.; Liu, P. “Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization” BMC Bioinformatics 22(1), 2021 https://doi.org/10.1186/s12859-021-04232-2.

Anthony, B.M.; Chaparro, J.M.; Sterle, D.G.; Prenni, J.E.; Minas, I.S. “Metabolic signatures of the true physiological impact of canopy light environment on peach fruit quality” Environmental and Experimental Botany, 2021 https://doi.org/10.1016/j.envexpbot.2021.104630.

Mason, T.J.; Bettenhausen, H.M.; Chaparro, J.M.; Uchanski, M.E.; Prenni, J.E. “Evaluation of ambient mass spectrometry tools for assessing inherent postharvest pepper quality” Horticulture Research 8(160), 2021 https://doi.org/10.1038/s41438-021-00596-x.

Davis, H. E.; Budde, A.; Geornaras I.; Lindstrom V.; Chaparro J.M.; Yang, H.; Cross, H.R.; Gehring, K.B.; Belk K.E.; Engle T.E.; Prenni J.E. “Effects of dietary tallow containing trace amounts of ractopamine and the impact of withdrawal time on ractopamine residues in the gastrointestinal tract” Journal of Applied Animal Science 37(4), 2021 https://doi.org/10.15232/aas.2020-02095.

Watson, H.G.; Decloedt, A.I.; Hemeryck, L.Y.; Van Landschoot, A.; Prenni, J. “Peptidomics of an industrial gluten-free barley malt beer and its non-gluten-free counterpart: Characterization and immunogenicity.” Food Chemistry, 2021 https://doi.org/10.1016/j.foodchem.2021.129597.

Chiniquy, D.; Zhou, J.; Hartman, K.; Li, X.; Sheflin, A.; Pella, A.; Marsh, E.; Prenni, J.; Deutschbauer, A.M.; Schachtman, D.; Tringe, S.G. “Microbial community surveys of field grown sorghum reveal highly abundant Pseudomonas phylotypes in the rhizosphere” Frontiers in Microbiology, 2021 https://doi.org/10.3389/fmicb.2021.598180.

Johnson, S.A.; Prenni, J.E.; Heuberger, A.L.; Isweiri, H.; Chaparro, J.M.; Newman, S.E.; Uchanski, M.E.; Omerigic, H.M.; Michell, K.A.; Bunning, M.; Foster, M.T.; Thompson, H.J.; Weir, T.J. “Comprehensive Evaluation of Metabolites and Minerals in Six Microgreen Species and the Influence of Maturity” Current Developments in Nutrition 5(2), 2021 https://doi.org/10.1093/cdn/nzaa180.

Lind, L.; Salihovic, S.; Ganna, A.; Sundström, J.; Broeckling, C.; Magnusson, P.; Prenni, J.; Fall, T.; Ärnlöv, J.; “A multi-cohort metabolomics analysis discloses 9-decenoylcarnitine to be associate with incident atrial fibrillation”, Journal of the American Heart Association, 2021 https://doi.org/10.1161/JAHA.120.017579.

Brasier, N.; Widmer, A.; Osthoff, M.; Mutke, M.; De Ieso, F.; Brasier-Lutz, P.; Wolfe, L.; Aithal, V.; Broeckling, C. D.; Prenni, J.; Eckstein, J. “Non-invasive Drug Monitoring of β-Lactam Antibiotics Using Sweat Analysis-A Pilot Study” Frontiers in Medicine, 2020 https://doi.org/10.3389/fmed.2020.00476

Anthony, B.; Chaparro, J.; Prenni J. E.; Minas, I. S. “Early metabolic priming under differing carbon sufficiency conditions influences peach fruit quality development” Journal of Experimental Botany, 2020 https://doi.org/10.1016/j.plaphy.2020.11.004

Davis, H.E.; Geornaras, I.; Lindstrom, V.; Chaparro, J.M.; Nair, M.N.; Delmore, R.J.; Engle, T. E.; Saltman, R.L.; Belk, K.E.; Prenni, J.E. “Evaluation of Withdrawal Protocols on Ractopamine Residue Concentrations in Muscle, Fat, Rendered Tallow, and Large Intestine from Beef Cattle” PLOS ONE, 2020 https://doi.org/10.1371/journal.pone.0242673

Nowak, C.; Salihovic, S.; Broeckling, C.D.; Ganna, A.; Prenni, J.E.; Sundtrom, J.; Berne, C.; Lind, L.; Ingelsson, E.; Fall, T.; Arvolv, J. “Non-targeted urine metabolomics and associations with prevalent and incidence type 2 diabetes” Scientific Reports, 2020 https://doi.org/10.1038/s41598-020-72456-y

Schinkel, E.R.; Nelson, E.R.; Bernstein, R.M.; Taylor, S.N.; Hay, W.W.; Brown, K.; Prenni, J.E.; Washabough, J. “Concentrating Human Milk: An Innovative point-of-care device designed to increase human milk feeding options for preterm infants” Journal of Perinatology, 2020 DOI: 10.1038/s41372-020-00820-x

Le, C.H.; Benage, L.G.; Specht, K.S.; Li Puma, L.C.; Mulligan, C.M.; Heuberger, A.L.; Prenni, J.; Claypool, S.M.; Chatfield, K.C.; Sparagna, G.C.; Chicco, A.J. “Tafazzin deficiency impairs CoA-dependent oxidative metabolism in cardiac mitochondria” Journal of Biological Chemistry, 2020 DOI: 10.1074/jbc.RA119.011229

Zhai, C.; Blanchefort, A.D.; Brown, K.; Prenni, J.E.; Woerner, D.R.; Belk, K. E.; Nair, M.N. “Tandem mass tagged dataset used to characterize muscle-specific proteome changes in beef during early postmortem period” Data in Brief, volume 32, 2020 doi: https://doi.org/10.1016/j.dib.2020.106064

Michell, K.A.; Isweiri, H.; Newman, S.E.; Bunning, M.; Bellows, L.L.; Dinges, M.M.; Grabos, L.E.; Rao, S.; Foster, M.T.; Heuberger, A.L.; Prenni, J.E.; Thompson, H.J.; Uchanski, M.E.; Weir, T.L.; Johnson, S.A. “Microgreens: Consumer Sensory Perception and Acceptance of an Emerging Functional Food Crop” Journal of Food Science 85(4), 2020 DOI: 10.1111/1750-3841.15075

This article was selected for inclusion in a special competitive section of the journal “New Horizons in Food Research” which is reserved for highlighting groundbreaking articles that provide new and unique insights.

 Zhai, C.; Allahadjibeye, D.B.; Prenni, J.E.; Woerner, D.R.; Belk, K.E.; Nair, M. “Tandem mass tag labeling to characterize muscle-specific proteome changes in beef during early postmortem period” Proteomics, 2020 DOI: 10.1016/j.jprot.2020.103794

Cravens, E.; Kirkwood, J.; Wolfe, L.; Packer, R.; Whalen, L.; Wojda, S.; Prenni, J.; Florant, G.; Donahue, S.; “The effects of neurectomy and hibernation on bone proteomics and the endocannabinoid system in marmots (Marmota flaviventris)” Comparative Biochemistry and Physiology, Part A, 2019 DOI: 10.1016/j.cbpa.2019.110621

Lind, L.; Salihovic, S.; Ganna, A.; Sundstrom, J.; Broeckling, C.D.; Magnusson, P.K.; Pedersen, N.L.; Siegbahn, A.; Prenni, J.E.; Fall, T.; Ingelsson, E.; Arnlov, J. “A multi-cohort metabolomics analysis discloses sphingomyelin (32:1) levels to be inversely related to incident ischemic stroke” Journal of Stroke and Cerebrovascular Diseases, 2019 DOI: 10.1016/j.jstrokecerebrovasdis.2019.104476

Davis, H. E.; Badger, C-D; Brophy, P.; Geornaras, G.; Burnett, T.J.; Scanga, J.; Belk, K.; Prenni, J.E. “Quantification of ractopamine residues on and in beef digestive tract tissues.” Journal of Animal Science, 2019 DOI: 10.1093/jas/skz263

Stenemo, M.; Ganna, A.; Salihovic, S.; Nowak, C., Dipl.-Psych; Sundström, J.; Giedraitis, V.; Broeckling, C.D.; Prenni, J.E.; Svensson, P.; Magnusson, P.K.E.; Lind, L.; Ingelsson, E.; Ärnlöv, J.; Fall, T. “The metabolites urobilin and sphingomyelin (30:1) are associated with incident heart failure in the general population” European Society of Cardiology Heart Failure, 2019 DOI: 10.1002/ehf2.12453

Sheflin, A.M.; Kirkwood, J.S.; Wolfe, L.M.; Jahn, C.E.; Broeckling, C.D.; Schachtman, D.S.; Prenni, J.E. “High-throughput quantitative analysis of phytohormones in sorghum leaf and root tissue by ultra-performance liquid chromatography-mass spectrometry.” Analytical and Bioanalytical Chemistry, 2019 DOI: 10.1007/s00216-019-01658-9

Sheflin^, A.; Chiniquy, D.; Yuan, C.; Goren, E.; Kumar, I.; Braud, M.; Brutnell, T.; Eveland, A.; Tringe, S.; Liu, P.; Kresovich, S.; Marsh, E.; Schachtman, D.; Prenni, J.; “Metabolomics of sorghum roots during nitrogen stress reveals compromised metabolic capacity for defense response” Plant Direct, 2019 DOI: 10.1002/pld3.122

Gredell, D.A.; Schroeder, A.R.; Belk, K.E.; Broeckling, C.D.; Heuberger, A.L.; Kim, S-Y.; King, D.A.; Shackelford, S.D.; Sharp, J.L.; Wheeler, T.L.; Woerner, D.R.; Prenni, J.E. “Comparison of Machine Learning Algorithms for Predictive Modeling of Beef Attributes Using Rapid Evaporative Ionization Mass Spectrometry (REIMS) Data” Scientific Reports, 2019 DOI: 10.1038/s41598-019-40927-6

King, D.A.; Shackelford, S.; Broeckling, C.D.; Prenni, J.E.; Belk, K.E.; Wheeler, T. “Metabolomic Investigation of Tenderness and Aging Response in Beef Longissimus Steaks” Meat and Muscle Biology 3(1), 2019 DOI: https://doi.org/10.22175/mmb2018.09.0027

Rossmassler, K.; Kim, S.; Broeckling, C.; Galloway, S.; Prenni, J.; De Long, S.K. “Impact of Primary Carbon Sources on Microbiome Shaping and Biotransformation of Pharmaceuticals and Personal Care Products” Biodegradation, 2019 DOI: 10.1007/s10532-019-09871-0

Broeckling, C.; Hoyes, E.; Richardson, K.; Brown, J.; Prenni, J.E. “DataSet-Dependent Acquisition enables comprehensive tandem mass spectrometry coverage of complex samples.” Analytical Chemistry, 2018 DOI: https://doi.org/10.1021/acs.analchem.8b00929

Nieto, L.M.; Mehaffy, C.; Islam, M.N.; Fitzgerald, B.; Belisle, J.; Prenni, J.E.; Dobos, K.M. “Biochemical characterization of isoniazid resistant Mycobacterium tuberculosis: can the analysis of clonal strains reveal novel targetable pathways” Molecular and Cellular Proteomics, 2018 DOI: 1074/mcp.RA118.000821

Chicco, A.J.; Le, C.H.; Gnaiger, E.; Dreyer, H.C.; Muyskens, J.B.; D’Alessandro, A.; Nemkov, T.; Hocker, A.D.; Prenni, J.E.; Wolfe, L.M.; Sindt, N.M.; Lovering, A.T.; Subudhi, A.W.; Roach, R.C. “Adaptive remodeling of skeletal muscle energy metabolism in high-altitude hypoxia: Lessons from AltitudeOmics” Journal of Biological Chemistry, 2018 DOI: 1074/jbc.RA117.000470

Mulawa, E.A.; Kirkwood, J.S.; Wolfe, L.M.; Wojda, S.J.; Prenni, J.E.; Florant, G.L.; Donahue, S.W. “Seasonal changes in endocannabinoid ligand concentrations between active and hibernating marmots (Marmota flaviventris)” Journal of Biological Rhythms, 2018 doi: https://doi.org/10.1177/0748730418777660

Chaparro, J.M.; Holm, D.G.; Broeckling, C.D.; Prenni, J.E.; Heuberger, A.L. “Metabolomics and ionomics of potato tuber reveals an influence of cultivar and market class on human nutrients and bioactive compounds” Frontiers in Nutrition, 2018DOI: 3389/fnut.2018.00036

Brophy, P.; Broeckling, C.D.; Murphy, J.; Prenni, J.E. “Ion-neutral clustering of bile acids in electrospray ionization across UPLC flow regimes” Journal of the American Society for Mass Spectrometry, 2018 DOI: https://doi.org/10.1007/s13361-017-1878-6

Robison, F.; Turner, M.; Jahn, C.; Schwartz, H.; Prenni, J.E.; Brick, M.; Heuberger, A.L. “Common bean varieties demonstrate differential physiological and metabolic responses to the pathogenic fungus Sclerotinia Sclerotiorum” Plant, Cell & the Environment, 2018 DOI: 1111/pce.13176

Salihovic, S.; Fall, T.; Ganna, A.; Broeckling, C.; Prenni, E.; Hyötyläinen, T.; Kärrman, A.; Lind, M.; Ingelsson, E.; Lind, L. “Identification of metabolic profiles associated with human exposure to perfluoroakyl substances” Journal of Exposure Science and Environmental Epidemiology, 2018 DOI: 10.1038/s41370-018-0060-y

Broeckling, C.D.; Prenni, J.E. “Stacked injections of biphasic extractions for improved metabolomics coverage and sample throughput” Analytical Chemistry 90(2), 2018 DOI: https://doi.org/10.1021/acs.analchem.7b03654

Nowak, C.; Trombley, ; Salihovic, S.; Castillejo-Lopez, C.; Ganna, A.; Cook, N.; Broeckling, C.D.; Prenni, J.E.; Shen, X.; Giedraitis, V.; Ärnlöv, J.; Lind, L.; Berne, C.; Sundström, J.; Fall, T.; Ingelsson, E. “Glucose challenge metabolomics implicates medium-chain acylcarnitines in insulin resistance” Scientific Reports 8(1), 2018 doi: 10.1038/s41598-018-26701-0

Sindt, N.M.; Robison, F.; Brick, M.A.; Schwartz, H.F.; Heuberger, A.L.; Prenni, J.E. “MALDI-TOF MS with PLS modeling enables strain typing of the bacterial plant pathogen Xanthomonas axonopodis” Journal of the American Society for Mass Spectrometry, 2017 doi: 1007/s13361-017-1839-0

Kim, S.; Rossmassler, K.; Broeckling, C.D.; Galloway, S.; Prenni, J.; De Long, S.K. “Impact of inoculum sources on biotransformation of pharmaceuticals and personal care products” Water Research, Volume 125, 2017 DOI:1016/j.watres.2017.08.041

Shishkova, E.; Kwiecien, N.; Hebert, A.S.; Westphall, M.S.; Prenni, J.E.; Coon, J.J. “Gender diversity in a STEM subfield – analysis of a large scientific society and its annual conferences” Journal of the American Society for Mass Spectrometry, 2017 DOI: 1007/s13361-017-1803-z

This paper was included in Springer Natures’s Change the World, One Article at a Time initiative.  Articles were chosen by Editors-in-Chief that had an impact on society’s most pressing problems.

Romero, J.J.; Liebig, B.E.; Broeckling, C.D.; Prenni, J.E.; Hansen, T.R. “Pregnancy-induced changes in metabolome and proteome in ovine uterine flushings”Biology of Reproduction 97(2),  2017 DOI: 1093/biolre/iox078

Hoxmeier, J.C.; Fleshman, A.; Broeckling, C.D.; Prenni, J.E.; Gage, L.E.K “Metabolomics of the tick-Borrelia interaction during the nymphal tick blood meal” Scientific Reports, 2017 DOI: 1038/srep44394

Doherty AH, Roteliuk DM, Gookin SE, McGrew AK, Broccardo C.J., Condon KW, Prenni J.E., Wojda SJ, Florant GL, Donahue SW. “Exploring the Bone Proteome to Help Explain Altered Bone Remodeling and Preservation of Bone Architecture and Strength in Hibernating Marmots”. Physiological and Biochemical Zoology. 2016 Sep-Oct;89(5):364-76. DOI: 10.1086/687413.

Kirkwood J.S., Broeckling C.D., Donahue S, Prenni J.E., “A novel microflow LC-MS method for the quantitation of endocannabinoids in serum” (2016), Journal of Chromatography B, 1033-1034(15); 271-277, DOI: 10.1016/j.jchromb.2016.08.035

Christoph Nowak; Samira Salihovic; Andrea Ganna; Stefan Brandmeier; Taru Tukiainen; Corey D Broeckling; Patrik K Magnusson; Prenni J.E.; Rui Wang-Sattler; Annette Peters; Konstantin Strauch; Thomas Meitinger; Vilmantas Giedraitis; Johan Ärnlöv; Christian Berne; Christian Gieger; Samuli Ripatti; Lars Lind; Nancy L Pedersen; Johan Sundström; Erik Ingelsson; Tove Fall “Effect of insulin resistance on monounsaturated fatty acid levels:  A Multi-cohort non-targeted metabolomics and mendelian randomization study”  (2016); PLOS Genetics, 2016 Oct 21;12(10):e1006379. DOI: 10.1371/journal.pgen.1006379

Adewole OO, Erhabor GE, Adewole TO, Ojo AO, Harriet O, Wolfe L.M., Prenni J.E..  Proteomic profiling of Eccrine sweat reveals its potential as a diagnostic biofluid for active tuberculosis.  Proteomics – Clinical Applications, (2016) Mar 7. DOI: 10.1002/prca.201500071

Tove Fall, Samira Salihovic^, Stefan Brandmaier, Christoph Nowak, Andrea Ganna, Stefan Gustafsson, Corey D. Broeckling, Prenni J.E., Gabi Kastenmuller, Annette Peters, Patrik K Magnusson, Rui Wang-Sattler, Vilmantas Giedraitis, Christian Gieger, Nancy Pedersen, Erik Ingelsson, Lars Lind “Non-targeted metabolomics combined with genetic analyses identifies bile acid synthesis and phospholipid metabolism to be associated with incident type 2 diabetes” (2016), Diabetologia, DOI: 10.1007/s00125-016-4041-1

Broeckling, Corey D; Ganna, Andrea; Layer, Mark; Brown, Kevin; Sutton, Ben; Ingelsson, Erik; Peers, Graham; Prenni J.E. “Enabling Efficient and Confident Annotation of LC-MS Metabolomics Data through MS1 Spectrum and Time Prediction.” (2016) Analytical Chemistry, 88 (18), pp 9226–9234 10.1021/acs.analchem.6b02479 

Samira Salihovic, Andrea Ganna, Tove Fall, Stefan Gustafsson, Corey D. Broeckling, Prenni J.E., Bert van Bavel, P. Monica Lind, Erik Ingelsson, Lars Lind “The metabolic fingerprint of p, p’-DDE and HCB exposure in humans” Environment International 88 (2016) 60-65, DOI: 10.1016/j.envint.2015.12.015

Marie F.S. Turner; Jay S. Kirkwood; Adam L. Heuberger; Carl Collins; Ed Wolfrum; Corey D. Broeckling; Jessica E. Prenni; Courtney E. Jahn “Non-targeted metabolomics in diverse sorghum breeding lines indicates primary and secondary metabolite profiles are associated with plant biomass accumulation and photosynthesis” (2016) Frontiers in Plant Science, Jul 11;7:953. DOI: 10.3389/fpls.2016.00953

Adam L. Heuberger; Corey D Broeckling; Dana Sedin; Christian Holbrook; Lindsay Guerdrum; Kaylyn Kirkpatrick; Prenni J.E. “Evaluation of non-volatile metabolites in beer stored at high temperature and utility as an accelerated method to predict flavor stability” (2016) Food Chemistry, 200, 301-307, DOI: 10.1016/j.foodchem.2016.01.022

Ganna A, Fall T, Salihovic S, Lee W, Broeckling CD, Kumar J, Hagg S, Stenemo M, Magnusson PKE, Prenni J.E., Lind L, Pawitan Y, Ingelsson E “Large-scale non-targeted metabolomic profiling in three human population-based studies” Metabolomics, (2016) 12:4, DOI: 10.1007/s11306-015-0893-5

Abate-Pella, D.; Freund, D.M.; Ma, Y.; Simón-Manso, Y.; Hollender, J.; Broeckling, C.D.; Huhman, D.V.; Krokhin, O.V.; Stoll, D.R.; Hegeman, A.D.; Kind, T.; Fiehn, O.; Schymanski, E.L.; Prenni, J.E.; Sumner, L.W.; Boswell, P. “Retention projection enables accurate calculation of liquid chromatographic retention times across labs and methods” Journal of Chromatography A., 2015 DOI: 10.1016/j.chroma.2015.07.108

Robison, F.M.; Heuberger, A.L.; Brick, M.A.; Prenni, J.E. “Proteome Characterization of Leaves in Common Bean” Proteomes 3(3), 2015 DOI: 10.3390/proteomes3030236

Kimberly Marie Webb, Ph.D.; William M Wintermantel; Navneet Kaur; Prenni, J.E; Carolyn J Broccardo; Lisa M Wolfe; Laura L Hladky, (2015) “Differential abundance of proteins in response to Beet necrotic yellow vein virus during compatible and incompatible interactions in sugar beet containing Rz1 or Rz2” Physiological and Molecular Plant Pathology, volume 91, pg 96-105, DOI: 10.1016/j.pmpp.2015.06.006

Hoxmeier JC, Thompson BD, Broeckling C.D., Small P, Foy BD, Prenni, J.E, Dobos KD. (2015) “Analysis of the metabolome of Anopheles gambiae mosquito after exposure to Mycobacterium ulcerans”. Scientific Reports, 2015;5:9242. DOI: 10.1038/srep09242

Szerlong H, Herman JA, Krause CM, Deluca JG, Skoultchi A, Winger QA, Prenni, J.E, Hansen JC (2015) “Proteomic characterization of the nucleolar linker histone H1 interaction network” Journal of Molecular Biology, 2015 Jun 5;427(11):2056-71. DOI: 10.1016/j.jmb.2015.01.001

Ganna, A.; Salihovic, S.; Sundstrom, J.; Broeckling, C.D.; Hedman, A.K.; Magnusson, P.K.E.; Pedersen, N.L.; Larsson, A.; Siegbahn, A.; Zilmer, M.; Prenni, J.E.; Arnlov, J.; Lind, L.; Fall, T.; Ingelsson, E. “Large-scale metabolomic profiling identifies novel biomarkers for incident coronary heart disease” PLOS Genetics, 2014 DOI: 1371/journal.pgen.1004801

Broeckling, C.D.; Afsar, F.A.; Neumann, S.; Ben-Hur, A.;Prenni, J.E. “RAMClust: A Novel Feature Clustering Method Enables Spectral-Matching-Based Annotation for Metabolomics Data” Analytical Chemistry 86(14), 2014 DOI: https://doi.org/10.1021/ac501530d

Heuberger, A.L.; Robison, F.M.; Lyons, S.M.A.; Broeckling, C.D.; Prenni, J.E. “Evaluating plant immunity using mass spectrometry-based metabolomics workflows” Frontiers in Plant Science, 2014 DOI: 3389/fpls.2014.00291

Brandt, L.E.; Ehrhart, E.J.; Scherman, H.; Olver, C.S.; Bohn, A.A.; Prenni, J.E. “Characterization of the canine urinary proteome” Veterinary Clinical Pathology, 2014 DOI: 1111/vcp.12147

Henley, T.; Reddivari, L.; Broeckling, C.D.; Bunnng, M.; Miller, J.; Avens, J.S.; Stone, M.; Prenni, J.E.; Vanamala, J. “American India Pale Ale matrix rich in xanthohumol is potent in suppressing proliferation and elevating apoptosis of human colon cancer cells” International Journal of Food Science and Technology, 2014 DOI: https://doi.org/10.1111/ijfs.12570

Kumar, J.; Karlsson, R.; Broeckling, C.D.; Prince, J.A.; Hong, M.G.; Prenni, J.E.; Ingelsson, E.; Wiklund, F. “Associations of Body Mass Index and Obesity-Related Genetic Variants with Serum Metabolites” Current Metabolomics 2(1), 2014 DOI:  2174/2213235X02666140214200752

Reisdorph, N.; Stearman, R.; Kechris, K.; Phang, T.L.; Reisdorph, R.; Prenni, J.; Erle, D.J.; Coldren, C.; Schey, K.; Nesvizhskii, A.; Geraci, M. “Hands on Workshops as an Effective Means of Learning Advanced Technologies Including Genomics, Proteomics, and Bioinformatics” Genomics, Proteomics, and Bioinformatics 11(6), 2014 DOI: https://doi.org/10.1016/j.gpb.2013.10.002

Webb, K.; Broccardo, C.; Prenni, J.E.; Wintermantel, W. “Proteomics Profiling of Sugar Beet (Beta vulgaris) Leaves during Rhizomania Compatible Interactions” Proteomes 2(2), 2014 DOI: https://doi.org/10.3390/proteomes2020208

Barnes, B.; Wilson, M.; Carr, P.; Vitha, M.; Broeckling, C.; Heuberger, A.; Prenni, J.; Gregory, J.; Corcoran, H.; Snow, N.; Chopra, S.; Dhandapani, R.; Tawfall, A.; Sumner, L.; Boswell, P. “Retention Projection” Enables Reliable Use of Shared Gas Chromatographic Retention Data Across Labs, Instruments, and Methods” Analytical Chemistry 85(23), 2013 DOI: https://doi.org/10.1021/ac4033615

Heuberger, A.L.; Broeckling, C.D.; Kirkpatrick, K.R.; Prenni, J.E. “Application of nontargeted metabolite profiling to discover novel markers of quality traits in an advanced population of malting barley” Plant Biotechnology Journal, 2013 DOI: 1111/pbi.12122

Schauer, K.L.; Freund, D.M.; Prenni, J.E.; Curthoys, N.P. “Proteomics Profiling and Pathway Analysis of the Response of Rat Renal Proximal Convoluted Tubules to Metabolic Acidosis” AJP – Renal Physiology 305(5), 2013 DOI: 1152/ajprenal.00210.2013

Broccardo, C.J.; Hussey, G.S.; Goehring, L.; Lunn, P.; Prenni, J.E. “Proteomic Characterization of Equine Cerbrospinal Fluid” Journal of Equine Veterinary Science 34(3), 2013 DOI: https://doi.org/10.1016/j.jevs.2013.07.013

Schauer, K.L.; Broccardo, C.J.; Webb, K.M.; Covey, P.A.; Prenni, J.E. “Mass Spectrometry Contamination from Tinuvin 770, a Common Additive in Laboratory Plastics” Journal of Biomolecular Techniques, 2013 DOI: 7171/jbt.13-2402-004

Freund, D.M.; Prenni, J.E.; Curthoys, N.P.; “Proteomics Profiling of the Mitochondrial Inner Membrane of Rat Renal Proximal Convoluted Tubules” Proteomics, 2013 DOI: 1002/pmic.201200558

Broccardo, C.J.; Schauer, K.L.; Kohrt, W.M.; Schwartz, R.S.; Murphy, J.P.; Prenni, J.E. “Multiplexed Analysis of Steroid Hormones in Human Serum Using Novel Microflow Tile Technology and LC-MS/MS” Journal of Chromatography B, 2013 DOI: 1016/j.jchromb.2013.06.031

Kumar, J.; Broeckling, C.D.; Wiklund, F.; Ingelsson, E.; Prenni, J.E.; “Influence of Biological and Technical Covariates on Non-targeted Metabolite Profiling in a Large-scale Epidemiological Study” Current Metabolomics 1(3), 2013 DOI: 2174/2213235X113019990002

Ryan, E.P.; Heuberger, A.L.; Broeckling, C.D.; Borresen, E.; Oillia, C.; Prenni, J.E. “Advances in Nutritional Metabolomics” Current Metabolomics 1(2), 2013 DOI: 2174/2213235×11301020001

Shen, M.; Broeckling, C.D.; Chu, E.Y.; Ziegler, G.; Baxter, I.R.; Prenni, J.E.; Hoekenga, O.A.; “Leveraging non-targeted metabolite profiling via statistical genomics” PLOS ONE 8(2), 2013 DOI: 1371/journal.pone.0057667

Fruend, D.M.; Prenni, J.E. “Improved Detection of Quantitative Differences Using a Combination of Spectral Counting and MS/MS Total Ion Current” Journal of Proteome Research 12 (4), 2013 DOI: 1021/pr400100k

Kalashnikova, A.A.; Duane, W.D.; McBryant, S.J.; Herman, J.A.; Deluca, J.; Luger, K.; Prenni, J.E.; Hansen, J.C. “Linker Histone H1.0 Interacts with an Extensive Network of Proteins Involved in mRNA Metabolism” Nucleic Acids Research, 2013 PMID: 23435226

Broeckling, C.D.; Heuberger, A.L.; Prenni, J.E. “Large Scale Non-targeted Metabolomic Profiling of Serum by Ultra Performance Liquid Chromatography-Mass Spectrometry (UPLC-MS)” Journal of Visualized Experiments, 2013 PMID: 23524330

Hong, M.G.; Karlsson, R.; Magnusson, P.K.E.; Lewis, M.R.; Isaacs, W.; Zheng, L.S.; Xu, J.; Gronberg, H.; Ingelsson, E.; Pawitan, Y.; Broeckling, C.D.; Prenni, J.E.; Wiklund, F.; Prince, J.A. “A Genome-Wide Assessment of Variability in Human Serum Metabolism” Human Mutation, 2012 DOI: 1002/humu.22267

Prenni, A.J.; Tobo1, Y.; Garcia, E.; DeMott, P.J.; McCluskey, C.S.; Kreidenweis, S.M.; Prenni, J.E.; Huffman, J.A.; Pöhlker, C.; Pöschl, U. “The impact of rain on ice nuclei populations at a forested site in Colorado” Geophysical Research Letters, 2012 DOI: 1029/2012GL053953

Freund, D.M.; Prenni, J.E.; Curthoys, N.P. “Response of the Mitochondrial Proteome of Rat Renal Proximal Convoluted Tubules to Chronic Metabolic Acidosis” American Journal of Physiology – Renal Physiology, 2012 PMID: 23136003

Bisson, G.P.; Mehaffy, C.; Broeckling, C.; Prenni, J.; Rifat, D.; Lun, D.S.; Burgos, M.; Weissman, D.; Karakousis, P.C.; Dobos, K. “Upregulation of the phthiocerol dimycocerosate biosynthetic pathway by rifampicin-resistant, rpoB-mutant Mycobacterium tuberculosis.” Journal of Bacteriology, 2012 DOI: 1128/JB.01013-12

Broeckling, C.D.; Heuberger, A.L.; Prince, J.A.; Ingelsson, E.; Prenni, J.E. “Assigning precursor-product ion relationships in indiscriminant MS/MS data from non-targeted metabolite profiling studies.” Metabolomics, 2012 DOI: https://doi.org/10.1007/s11306-012-0426-4

Heuberger, A.L.; Broeckling, C.; Lewis, M.; Salazar, L.; Bouckaert, P.; Prenni, J.E.; “Metabolomic profiling of beer reveals effect of temperature on non-volatile small molecules during short-term storage.” Food Chemistry, 2012 DOI: 1016/j.foodchem.2012.05.048

Prenni, J.E.; Vidal, M.; Olver C.S. “Preliminary Characterization of the murine membrane reticulocyte proteome” Blood Cells, Molecules, and Diseases, 2012 DOI: 1016/j.bcmd.2012.05.002

Cho, Y.S.; Dobos, K.M.; Prenni, J.E.; Yang, H.; Hess, A.; Rosenkrands, I.; Andersen, P.; Ryoo, S.W.; Bai G.H.; Brennan, M.J.; Izzo, A.; Bielefeldt-Ohmann, H.; Belisle, J.T. “Deciphering the proteome of the in vivo diagnostic reagent “purified protein derivative” Mycobacterium tuberculosis Proteomics, 2012 DOI: 1002/pmic.201100544

Fujimoto, S.; Seebart, C.; Guastafierro, T.; Prenni, J.; Caiafa, P.; Zlatanova, J. “Proteome analysis of protein partners to nucleosomes containing canonical H2A or the variant histones H2A.Z or H2A.X” Biological Chemistry, 2012 DOI: 1515/BC-2011-216

Machain-Williams, C.; Mammen, M.P.; Zeidner, N.S.; Beaty, B.J.; Prenni, J.E.; Nisalak, A.; Blair, C.D. “Association of Human Immune Response to Aedes aegypti Salivary Proteins with Dengue Disease Severity” Parasite Immunology 34(1), 2011 DOI: 1111/j.1365-3024.2011.01339.x

Ryan, E.P.; Heuberger, A.L.; Weir, T.L.; Barnett, B.; Broeckling, C.D.; Prenni, J.E. “Rice Bran Fermented with Saccharomyces boulardii Generates Novel Metabolite Profiles with Bioactivity” Journal of Agricultural and Food Chemistry 59(5), 2011 DOI: https://doi.org/10.1021/jf1038103

Goldstrohm,A.; Broeckling, C.D.; Prenni, J.E.; Curthoys, N.P “Importance of Manual Validation for the Identification of Phosphopeptides using a Linear Ion Trap Mass Spectrometer” Journal of Biomolecular Techniques 22(1), 2010 PMCID: 21455477

Seebart, C.; Prenni, J.E.; Tomschik, M.; Zlatanova, J. “New Nuclear Partners for Nucleosome Assembly Protein 1: Unexpected Associations” Biochemistry and Cell Biology 88(6), 2010 DOI: 1139/O10-115

Kruh, N.; Troudt, J.; Izzo, A.; Prenni, J.E.; Dobos, K.M. “Portrait of a Pathogen: The Mycobacterium tuberculosis Proteome In Vivo” PLOS ONE, 2010 DOI: 1371/journal.pone.0013938

Szerlong, H.J.; Prenni, J.E.; Nyborg, J.K.; Hansen, J.C. “Activator-dependent p300 acetylation of chromatin in vitro: enhancement of transcription by disruption of repressive nucleosome-nucleosome interactions.” Journal of Biological Chemistry, 2010 DOI: 1074/jbc.M110.148718

Mehaffy, C.; Hess, A.; Prenni, J.E.; Mathema, B.; Kreiswirth, B.; Dobos, K.M. “Descriptive proteomic analysis shows protein variability between closely related clinical isolates of Mycobacterium tuberculosis” Proteomics, 2010 DOI: 1002/pmic.200900836

Wamsley, S.; Broeckling, C.; Hess, A.; Prenni, J.E.; Curthoys, N. “Proteomic Analysis of Brush Border Membrane Vesicles Isolated from Purified Proximal Convoluted Tubules” American Journal of Physiology – Renal Physiology, 2010 DOI: 1152/ajprenal.00711.2009

Mueller, N.H.; Walters, M.S.; Marcus, R.; Graf, L.L.; Prenni, J.E.; Gilden, D.; Silverstein, S.J.; Cohrs, R.J. “Identification of Phosphorylated Residues on Varicella-Zoster Virus Immediate Early Protein ORF63” Journal of General Virology, 2010 DOI: 1099/vir.0.019067-0

Olver, C.S.; Webb, T.L.; Long, L.J.; Scherman, H.; Prenni, J.E. “Comparison of methods for albumin and immunoglobulin depletion from equine serum.” Veterinary Clinical Pathology, 2010 DOI: 1111/j.1939-165X.2010.00241.x

Okaysu, E.; Freund, D.M.; Prenni, J.E.; Curthoys, N.P. “Elucidation of Phosphoproteins Involved in the Renal Cellular Response to Acute Metabolic Acidosis” Journal of Undergraduate Research and Scholarly Excellence, 2010 DOI: pdf

Bhamidi, S.; Scherman, M.S.; Rithner, C.D.; Prenni, J.E.; Chatterjee, D.; Khoo, K.; McNeil, M.R. “The Identification and Location of Succinyl Residues and the Characterization of the Interior Arabinan Region Allows for a Model of the Complete Primary Structure of Mycobacterium Tuberculosis Mycolyl Arabinogalactan” Journal of Biological Chemistry 283(19), 2008 DOI: https://doi.org/10.1074/jbc.M800222200

Dooley, G.P.; Reardon, K.F.; Prenni, J.E.; Legare, M.E.; Foradori, C.D.; Tessari, J.E.; Hanneman, W.H. “Proteomic Analysis of Diaminochlorotriazine (DACT) Adducts in Wister Rat Pituitary Glands and LbetaT2 Rat Pituitary Cells” Chemical Research in Toxicology 21(4), 2009 DOI: https://doi.org/10.1021/tx700386f

Prenni, J.E.; Swardson-Olver, C.J. “Proteomics: A Review and an Illustration” Veterinary Clinical Pathology 36(1), 2007 DOI: doi/epdf/10.1111/j.1939-165X.2007.tb00176.x

Bruemmer, J.; Lewis, M.; Prenni, J.E.; Squires, E.; Hansen, T. “Gene Expression in the Equine Endometrium during Maternal Recognition of Pregnancy” Biology of Reproduction, 2007 DOI: https://doi.org/10.1093/biolreprod/77.s1.98b

Dooley, G.P.; Prenni, J.E.; Cranmer, B.K.; Prentiss, P.L.; Andersen, M.E.; Tessari, J.D. “Identification of a Novel Hemoglobin Adduct in Sprague Dawley Rats Exposed to Atrazine” Chemical Research in Toxicology 19(5), 2006 DOI: https://doi.org/10.1021/tx060023c

Go, E.P.; Prenni, J.E.; Wei, J.; Jones, A.; Hall, S.C.; Witkowska, H.E.; Shen, Z.; Siuzdak, G. “Desporption/Ionization on Silicon Time-of-Flight/Time-of-Flight Mass Spectrometry” Analytical Chemistry, 2003 DOI: https://doi.org/10.1021/ac026253n

Prenni, J.E.; Shen, Z.; Trauger, S.; Chen, W.; Siuzdak, G. “Protein Characterization using Liquid Chromatography Desorption/Ionization on Silicon Mass Spectrometry (LC-DIOS-MS)” Spectroscopy, 2003 DOI: 1155/2003/172838

Ekhoff, J.A.; Farrow, M.J.; Walba, D.M.; Rowlen, K.L. “Molecular Orientation of a Model Liquid Crystal Alignment Layer” Talanta, 2003 DOI: https://doi.org/10.1016/S0039-9140(03)00141-3

Ekhoff, J.A.; Rowlen, K.L. “Effect of Interfacial Refractive Index on Optical Molecular Orientation Measurements” Analytical Chemistry, 2002 DOI: https://doi.org/10.1021/ac020477o

Ekhoff, J.A.; Westerbuhr, S.G.; Rowlen, K.L. “Evidence of Spontaneous Multilayer Formation for Disperse Red-1 at a Fused-Silica/2-Propanol Interface” Langmuir, 2001 DOI: https://doi.org/10.1021/la010853k

Espinoza, E.O.; Cech-Lindly, N.; Gordon, K.M.; Ekhoff, J.A.; Kirms, M.A. “Electrospray Ionization Mass Spectrometric Analysis of Blood Differentiation of Species”, Analytical Biochemistry, 1999 DOI: https://doi.org/10.1006/abio.1998.3048

Vance, F.W.; Lemon, B.I.; Ekhoff, J.A.; Hupp, J.T. “Interrogation of Nanoscale Silicon Dioxide/Water interfaces via hyper-Rayleigh scattering” Journal of Physical Chemistry B 102(11), 1998 DOI: org/10.1021/jp9800261